Here is a list of all variables with links to the classes they belong to:

- o -

occs : vg::MinimizerMapper::Minimizer
off_reference_pos_search_limit : vg::Surjector
offset : vg::algorithms::GFAzParser::PendingRGFAVisit, vg::GaplessExtension, vg::Haplotypes::TopLevelChain, vg::PathBranch, vg::Primer, vg::VectorView< Item >::const_iterator, vg::ZipCode::decoder_t
ok : vg::GAFSorterFile, vg::WFAAlignment
old_node : haplo::hDP_gbwt_graph_accessor< GBWTType >
old_score : vg::GaplessExtension
only_correctly_mapped : vg::ReadFilter< Read >
only_first_alignment : vg::ReadFilter< Read >
only_mapped : vg::ReadFilter< Read >
only_proper_pairs : vg::ReadFilter< Read >
open_chains : vg::ZipCodeForest::forest_growing_state_t
open_intervals : vg::ZipCodeForest::forest_growing_state_t
option : vg::subcommand::BaseArgSpec< Receiver >, vg::subcommand::BaseValuation
option_id : vg::subcommand::BaseArgSpec< Receiver >
option_offsets : vg::Configurable
option_to_index : vg::subcommand::OptionGroup< Receiver >
options_by_code : vg::ConfigurableParser
order : vg::DozeuInterface::OrderedGraph, vg::StreamSorter< Message >
order_length_repeat_hit_max : vg::MultipathMapper
oriented_chain_id : vg::FragmentedHaplotypeVisit
origin_fragment : vg::RecombinatorHaplotype
original_index : vg::ZipCodeTree::distance_iterator
original_right_to_left : vg::ZipCodeTree::distance_iterator
OS : vg::Version
other : vg::algorithms::Edge
other_orientation_timeout : vg::RepresentativeTraversalFinder
other_ref_samples : vg::Deconstructor
out : vg::ProblemDumpExplainer, vg::TSVExplainer
out_buffer : vg::zstd_compress_buf, vg::zstd_decompress_buf
out_file : vg::HTSWriter
out_stream : vg::MCMCCaller
outfile : vg::Viz
output_fields : vg::ReadFilter< Read >
output_file : ChainsConfig
output_format : ChainsConfig
output_in_progress : vg::Funnel
output_is_bgzf : vg::HTSWriter
output_name : MinimizerConfig
output_names : Vectorizer
output_png : vg::Viz
output_prefix : vg::IndexRegistry
output_svg : vg::Viz
output_tabbed : Vectorizer
output_variants : vg::VCFOutputCaller
output_vcf : vg::VCFOutputCaller
OUTPUT_VERSION : vg::StreamIndexBase
OVERLAP_THRESHOLD : vg::GaplessExtender
overwrite_score : vg::ReadFilter< Read >
own_snarl_manager : vg::Masker